PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0224s0190.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 284aa    MW: 31742.8 Da    PI: 5.1377
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0224s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.62.1e-361468761
                  zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                            +cprC s+ntkfCy+nnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  SapurV1A.0224s0190.1.p 14 SCPRCGSSNTKFCYHNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68
                            7***************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-26167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1921367IPR003851Zinc finger, Dof-type
PfamPF027011.9E-301467IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101551IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
METGWKEHGE ISPSCPRCGS SNTKFCYHNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG  60
GCRKNRRGKS MRLSTDVRSK ILGYGGLSNN SITHPFSHKG ISSIESSSSS MILDGSHIDL  120
ALVYAKFLNP QQDSESGFEV PEFGSEFDQP LEFPNIPNTY LESPDENGLA GSLTISDFST  180
EAPLTDNDHS IYYYSLDSSH KHRQDHQDKR CTSHETSSFQ FPPLPGQDAV SQDMLWSNSD  240
MMDNHSLEMS QQPVLGPDTQ DPDLLFDNWC PFDMSSDDTF SRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042585.11e-170PREDICTED: dof zinc finger protein DOF3.5
TrEMBLB9H9K81e-152B9H9K8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s21700.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-45Dof family protein